********************************** * Somatomedin B domain signature * ********************************** Somatomedin B, a serum factor of unknown function, is a cysteine-rich 45 residues peptide which is proteolytically derived from the N-terminal extremity of the cell-substrate adhesion protein vitronectin [1]. Somatomedin B-like domains are also found [2] in the following proteins: - Plasma-cell membrane glycoprotein PC-1. PC-1, a protein with nucleotide pyrophosphatase (EC 3.6.1.9) and alkaline phosphodiesterase I (EC 3.1.4.1) activities [3], is a type-II membrane protein of about 870 residues. PC1 consists of a short cytoplasmic domain, followed by a transmembrane region and a large extracellular domain. Two tandem copies of a somatomedin B domain are present in the N-terminal extremity of the extracellular domain. - Placental protein 11 (PP11). PP11 is a placental protein that seems to possess an amidolytic activity. A copy of the somatomedin B domain is present at the N-terminal extremity. As shown in the following schematic representation below there are eight conserved cysteines in the somatomedin B domain and they are probably all involved in disulfide bonds. xxCxxxxxxCxxxxxxxxxCxCxxxCxxxxxCCxxxxxCxxxxx ******************** 'C': conserved cysteine probably involved in a disulfide bond. '*': position of the pattern. -Consensus pattern: C-x-C-x(3)-C-x(5)-C-C-x-[DN]-[FY]-x(3)-C -Sequences known to belong to this class detected by the pattern: ALL. -Other sequence(s) detected in SWISS-PROT: NONE. -Expert(s) to contact by email: Jenne D. djenne@clsuni51.bitnet -Last update: December 1991 / First entry. [ 1] Jenne D., Stanley K.K. Biochemistry 26:6735-6742(1987). [ 2] Jenne D. Biochem. Biophys. Res. Commun. 176:1000-1006(1991). [ 3] Rebbe N.F., Tong B.D., Finley E.M., Hickman S. Proc. Natl. Acad. Sci. U.S.A. 88:5192-5196(1991).