********************************************************** * Crystallins beta and gamma 'Greek key' motif signature * ********************************************************** Crystallins are the dominant structural components of the eye lens. Among the different type of crystallins, the beta and gamma crystallins form a family of related proteins [1,2]. Structurally, beta and gamma crystallins are composed of two similar domains which, in turn, are each composed of two similar motifs with the two domains connected by a short connecting peptide. Each motif, which is about forty amino acid residues long, is folded in a distinctive 'Greek key' pattern. Apart from the different types of beta and gamma crystallins, this family also includes the following proteins: - Two related proteins from the sporulating bacterium Myxococcus xanthus: protein S, a calcium-binding protein that forms a major part of the spore coat, and a close homolog of protein S. - Spherulin 3a from the slime mold Physarum polycephalum. Spherulin 3a is a development specific protein synthesized in response to various kinds of stress leading to encystment and dormancy. The sequence of Spherulin 3a consists of two 'Greek key' motifs [3]. The pattern we developed for this family of proteins span positions 3 to 18 of the Greek-key motif and includes three conserved positions which are important for the structural integrity of the motif. These are the conserved aromatic residues in positions 6 and 11 of the motif and the glycine in position 13. -Consensus pattern: [LIVMFYWA]-x-{DEHRKSTP}-[FY]-[DEQHKY]-x(3)-[FY]-x-G-x(4)- [LIVMFCST] -Sequences known to belong to this class detected by the pattern: ALL. In a few cases the pattern will fail to detect one of the four motifs. -Other sequence(s) detected in SWISS-PROT: 122, but in all these sequences the pattern is found only ONCE. -Last update: April 1990 / Text revised. [ 1] Lubsen N.H., Aarts H.J.M., Schoenmakers J.G.G. Prog. Biophys. Mol. Biol. 51:47-76(1988). [ 2] Wistow G.J., Piatigorsky J. Annu. Rev. Biochem. 57:479-504(1988). [ 3] Wistow G. J. Mol. Evol. 30:140-145(1990).