**************************************************** * Mitochondrial energy transfer proteins signature * **************************************************** Different types of substrate carrier proteins involved in energy transfer are found in the inner mitochondrial membrane [1,2,3,4]. These are: - The ADP,ATP carrier protein (AAC) (ADP/ATP translocase) which exports ATP into the cytosol and imports ADP into the mitochondrial matrix. The sequence of AAC has been obtained from various mammalian, plant and fungal species. - The 2-oxoglutarate/malate carrier protein (OGCP), which exports 2-oxoglutarate into the cytosol and imports malate or other dicarboxylic acids into the mitochondrial matrix. This protein plays an important role in several metabolic processes such as the malate/aspartate and the oxoglutarate/isocitrate shuttles. - The phosphate carrier protein, which transports phosphate groups from the cytosol into the mitochondrial matrix. - The brown fat uncoupling protein (UCP) which dissipates oxidative energy into heat by transporting protons from the cytosol into the mitochondrial matrix. - The Grave's disease carrier protein (GDC), a protein of unknown function by IgG in patients with active Grave's disease. - Yeast mitochondrial proteins MRS3 and MRS4. The exact function of these proteins is not known. They suppress a mitochondrial splice defect in the first intron of the COB gene and may act as carriers, exerting their suppressor activity by modulating solute concentrations in the mitochondrion. - Yeast protein ACR1 [5], which seems essential for acetyl-CoA synthetase activity. - Yeast protein PMT1 [6]. - Yeast protein YMC1 [7]. Two other proteins have been found to belong to this family, yet are not localized in the mitochondrial inner membrane: - Maize amyloplast Brittle-1 protein [8]. This protein, found in the endosperm of kernels, could play a role in amyloplast membrane transport. - Candida boidinii peroxisomal membrane protein PMP47 [9]. PMP47 is an integral membrane protein of the peroxisome and it may play a role as a transporter. These proteins all seem to be evolutionary related. Structurally, they consist of three tandem repeats of a domain of approximately one hundred residues. Each of these domains contains two transmembrane regions. As a signature pattern, we selected one of the most conserved regions in the repeated domain, located just after the first transmembrane region. -Consensus pattern: P-x-[DE]-x-[LIVAT]-[RK]-x-[LRH]-[LIVMFY] -Sequences known to belong to this class detected by the pattern: ALL, except for PMP47. -Other sequence(s) detected in SWISS-PROT: 185. However, in all these proteins, the pattern is found only ONCE while it is found two to three times in members of this family. -Last update: June 1994 / Text revised. [ 1] Klingenberg M. Trends Biochem. Sci. 15:108-112(1990). [ 2] Walker J.E. Curr. Opin. Struct. Biol. 2:519-526(1992). [ 3] Nelson D.R., Lawson J.E., Klingenberg M., Douglas M.G. J. Mol. Biol. 230:1159-1170(1993). [ 4] Fernandez M., Fernandez E., Rodicio R. Mol. Gen. Genet. 242:727-735(1994). [ 5] Palmieri F. FEBS Lett. 346:48-54(1994). [ 6] Colleaux L., Richard G.-F., Thierry A., Dujon B. Yeast 8:325-336(1992). [ 7] Graf R., Baum B., Braus G.H. Yeast 9:301-305(1993). [ 8] Sullivan T.D., Strelow L.I., Illingworth C.A., Phillips R.L., Nelson O.E. Jr. Plant Cell 3:1337-1348(1991). [ 9] Jank B., Habermann B., Schweyen R.J., Link T.A. Trends Biochem. Sci. 18:427-428(1993).