*************************************************** * Cytosolic fatty-acid binding proteins signature * *************************************************** A number of low molecular weight proteins which bind fatty acids and other organic anions are present in the cytosol [1,2]. Most of them are structurally related and have probably diverged from a common ancestor. The proteins known to belong to this family are: - Three, tissue-specific, types of fatty acid binding proteins (FABPs) found in liver, intestine and heart. Heart FABP is also known as mammary-derived growth inhibitor (MDGI), a protein that reversibly inhibits proliferation of mammary carcinoma cells. - Psoriasis-associated fatty acid binding protein homolog (PA-FABP) [3]. This protein belongs to the FABP subfamily and is highly expressed in psioriatic skin. - Adipocyte lipid-binding protein (or 422 protein). - Cellular retinol-binding proteins I and II (CRBP). - Cellular retinoic acid-binding protein (CRABP). - Intestinal 15 Kd protein (I-15P) [4]. - Fatty acid binding proteins MFB1 and MFB2 from the midgut of the insect Manduca sexta [5]. In addition to the above cytosolic proteins, this family also includes: - Myelin P2 protein, which may be a lipid transport protein in Schwann cells. P2 is associated with the lipid bilayer of myelin. - Gastrotropin, an extracellular ileal protein which stimulates gastric acid and pepsinogen secretion. It seems that gastrotropin binds to bile salts and bilirubins. - Schistosoma mansoni protein Sm14 [6] which seems to be involved in the transport of fatty acids. We use as a signature pattern for these proteins a segment from the N-terminal extremity. -Consensus pattern: [GSAVK]-x-[FYW]-x-[LIVMF]-x(4)-[NHG]-[FY]-[DE]-x-[LIVMFY]- [LIVM]-x(2)-[LIVMA] -Sequences known to belong to this class detected by the pattern: ALL. -Other sequence(s) detected in SWISS-PROT: 3. -Last update: June 1994 / Pattern and text revised. [ 1] Bernier I., Jolles P. Biochimie 69:1127-1152(1987). [ 2] Veerkamp J.H., Peeters R.A., Maatman R.G.H.J. Biochim. Biophys. Acta 1081:1-24(1991). [ 3] Madsen P.S., Rasmussen H.H., Leffers H., Honore B., Celis J.E. J. Invest. Dermatol. 99:299-305(1992). [ 4] Kanda T., Odani S., Tomoi M., Matsubara Y., Ono T. Eur. J. Biochem. 197:759-768(1991). [ 5] Smith A.F., Tsuchida K., Hanneman E., Suzuki T.C., Wells M.A. J. Biol. Chem. 267:380-384(1992). [ 6] Moser D., Tendler M., Griffiths G., Klinkert M.-Q. J. Biol. Chem. 266:8447-8454(1991).